Index (Missed Detection Demo API)

A B C D E F G H I J K L M N O P Q R S T U V W

A

a(String, String) - Static method in class edu.rutgers.md.web.Tools: Generates an A HREF=...
about() - Method in enum edu.rutgers.md.sql.Survey.Status
actionLink() - Method in class edu.rutgers.md.sql.Survey: Generates an HTML snippet containing "View" and "Edit" links for this survey, as appropriate.
addRole(Role) - Method in class edu.rutgers.md.sql.User
ago(Date) - Static method in class edu.rutgers.md.format.Util
allowedUpdate(Survey.Status) - Method in enum edu.rutgers.md.sql.Survey.Status: Is change of status from this status to newStatus?
AllPredictions - Class in edu.rutgers.md.engine: An AllPredictions object contains information about all experts' predictions, and about the "ground truth" data.
AllPredictions(Vector<Prediction>) - Constructor for class edu.rutgers.md.engine.AllPredictions: Constructs an AllPrediction object as a wrapper over a vector of predictions.
asStringVector(Object, String) - Static method in class edu.rutgers.md.format.Reflect
asStringVector(Object, String, boolean) - Static method in class edu.rutgers.md.format.Reflect
AvgPrediction - Class in edu.rutgers.md.engine: Contains information about a weighted average of several experts' predictions.

B

Buttons() - Constructor for class edu.rutgers.md.web.DemoResultsBase.Buttons

C

checkbox(String, Object, boolean) - Static method in class edu.rutgers.md.web.Tools: "true" will be sent if the box is checked
checkbox(String, Object, Object, boolean) - Static method in class edu.rutgers.md.web.Tools: Creates an HTML "input" element of the "checkbox" type.
checkPassword(String) - Method in class edu.rutgers.md.sql.User
CODE - Static variable in class edu.rutgers.md.web.Response
code - Variable in class edu.rutgers.md.web.Response
compactFormat(Object) - Static method in class edu.rutgers.md.format.Reflect: Compact human readable format, with no extra quotes, for various HTML tables
compareTo(Object) - Method in class edu.rutgers.md.format.Reflect.Entry
computeD(double[]) - Method in class edu.rutgers.md.engine.Prediction: Computes the normalized JS-divergence between this prediction's vector of observables and the "true" one.
computeObservableProbs() - Method in class edu.rutgers.md.engine.Prediction: Computes a vector of observables probabilities: probabilities of the person been seen (apprehended) in each of the K periods, and (the last element) the probability of the person never been seen.
containsKey(String) - Method in class edu.rutgers.md.engine.ParseConfig
COOKIE_NAME - Static variable in class edu.rutgers.md.web.ExtendedSessionManagement
cp - Variable in class edu.rutgers.md.web.ResultsBase: The "conext" part of our URL.
create - Variable in class edu.rutgers.md.web.EditSurvey
CREATE - Static variable in class edu.rutgers.md.web.SaveSurvey
create - Variable in class edu.rutgers.md.web.SaveSurvey
CreateRoles - Class in edu.rutgers.md.sqltools: A very simple, stand-alone program that creates necessary Role entities in the roles table, and some User entities (for coordinators)
CreateRoles() - Constructor for class edu.rutgers.md.sqltools.CreateRoles
csvHeader(Class) - Static method in class edu.rutgers.md.format.Reflect: Saves the class description as the header line of a comma-separated file
csvRow(Object) - Static method in class edu.rutgers.md.format.Reflect
csvRow(Object, String) - Static method in class edu.rutgers.md.format.Reflect: Saves the object as a row of comma-separated file
CURVE - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
customizedReflect(Object, PairFormatter) - Static method in class edu.rutgers.md.format.Reflect: More pretty version of Reflect.reflectToString(Object o)

D

DemoMain - Class in edu.rutgers.md.web: Used by demomain.jsp.
DemoMain(HttpServletRequest) - Constructor for class edu.rutgers.md.web.DemoMain
DemoResultsBase - Class in edu.rutgers.md.web: The back end for demo/demoexpertsform.jsp
DemoResultsBase(HttpServletRequest) - Constructor for class edu.rutgers.md.web.DemoResultsBase
DemoResultsBase.Buttons - Class in edu.rutgers.md.web
DemoResultsBase.Names - Class in edu.rutgers.md.web: Names of query string parameters
DemoSessionData - Class in edu.rutgers.md.web: A single instance of this class is associated with a particular session of the Demo Application (via HttpSession.setAttribute), and stores all the information that may be set via one http request and needs to be accessible during the processing of other requests.
describe() - Method in enum edu.rutgers.md.sql.Survey.Status: Human-readable description of this status
describeGettingHere() - Method in enum edu.rutgers.md.sql.Survey.Status
destName() - Method in class edu.rutgers.md.format.Reflect.Entry: Class.field, e.g.
disable() - Method in class edu.rutgers.md.sql.User: Disables the user entry, i.e.
Display - Annotation Type in edu.rutgers.md.format: An annotation describing how, if at all, a particular data field (content of a SQL database column) is to be displayed in HTML tables and data entry forms etc.
doStartTag() - Method in class edu.rutgers.md.web.RUTag
doStats() - Method in class edu.rutgers.md.engine.AllPredictions: Computes the NJSD and weight for each expert, and the weighted average of all predictions

E

e - Variable in class edu.rutgers.md.web.ResultsBase: The JSP page may print this out if it is not null.
EA - Annotation Type in edu.rutgers.md.format: An annotation to add explanatory text to enum values in data entry forms.
editable - Variable in class edu.rutgers.md.format.Reflect.Entry
EditSurvey - Class in edu.rutgers.md.web: Back end of editSurvey.jsp
EditSurvey(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.EditSurvey
edu.rutgers.md.engine - package edu.rutgers.md.engine: Missed Detections computations; the only package needed for the command-line application.
edu.rutgers.md.format - package edu.rutgers.md.format: Object formatting (pretty printing).
edu.rutgers.md.sql - package edu.rutgers.md.sql: Data stored in persistent storage (MySQL database + OpenJPA).
edu.rutgers.md.sqltools - package edu.rutgers.md.sqltools: Auxiliary classes for handling persistent data using OpenJPA.
edu.rutgers.md.test - package edu.rutgers.md.test: Sample command-line applications for the Missed Detections tool kit, illustrating the use of the edu.rutgers.md.engine API.
edu.rutgers.md.web - package edu.rutgers.md.web: Generating JSP pages for the Missed Detections web application.
encryptAndSetPassword(String) - Method in class edu.rutgers.md.sql.User: Encrypts the passed password, and stores the encrypted value.
encryptPassword(String) - Static method in class edu.rutgers.md.sql.User
ensureClosed(EntityManager) - Static method in class edu.rutgers.md.web.ResultsBase: A hygienic way to close a connection, if it is open.
ensureClosed(EntityManager, boolean) - Static method in class edu.rutgers.md.web.ResultsBase: A hygienic way to close a connection, if it is open.
entries - Variable in class edu.rutgers.md.format.Reflect
Entry() - Constructor for class edu.rutgers.md.format.Reflect.Entry
equals(Object) - Method in class edu.rutgers.md.sql.Role: Equality is based on the role names
errmsg - Variable in class edu.rutgers.md.web.ResultsBase: The JSP page should print this out if error==true
error(String) - Static method in class edu.rutgers.md.engine.Logging
error - Variable in class edu.rutgers.md.web.ResultsBase: Will be set to true if an error happened
exceptionTrace() - Method in class edu.rutgers.md.web.ResultsBase: Returns the exception's stack trace, as a plain-text string
Expert - Class in edu.rutgers.md.sql: An Expert object contains information about a specific survey responder.
Expert() - Constructor for class edu.rutgers.md.sql.Expert: Creates a more or less unique code to identify a user
Expert(String, String) - Constructor for class edu.rutgers.md.sql.Expert
Expert(int, int, String) - Constructor for class edu.rutgers.md.sql.Expert
expert - Variable in class edu.rutgers.md.web.Response
expertCnt() - Method in class edu.rutgers.md.engine.AllPredictions: How many experts?
ExtendedSession - Class in edu.rutgers.md.sql: Designed similarly to the sample at http://openjpa.apache.org/embeddable-samples.html
ExtendedSession() - Constructor for class edu.rutgers.md.sql.ExtendedSession: Dummy constructor, just because OpenJPA requires it
ExtendedSession(String, Date) - Constructor for class edu.rutgers.md.sql.ExtendedSession
ExtendedSessionManagement - Class in edu.rutgers.md.web: This class is used to manage extended sessions, which survive over the web server restart.
ExtendedSessionManagement() - Constructor for class edu.rutgers.md.web.ExtendedSessionManagement

F

f - Variable in class edu.rutgers.md.format.Reflect.Entry
fetchVecs() - Method in class edu.rutgers.md.format.OurTable: This is meant to cause JPA load vectors that are not automatically loaded.
findByName(EntityManager, String) - Static method in class edu.rutgers.md.sql.User: Can be used instead of (User)em.find(User.class, un);
findExpert(String) - Method in class edu.rutgers.md.sql.Survey: Finds the entry for the expert identified by the expert's access code.
formatAsString(Object, String) - Static method in class edu.rutgers.md.format.Reflect: Formats a single field of an object.
formatResults(boolean) - Method in class edu.rutgers.md.engine.AllPredictions: Formats the data (the experts' predictions and the weighted averages) as an HTML table.
formPost(String, String) - Static method in class edu.rutgers.md.web.Tools: Generates a FORM...

G

G - Static variable in class edu.rutgers.md.engine.Prediction: All rates (apprehension rates, attempt rates) are entered and printed on the scale [0:G], rather than [0:1], while the internal representation of the rates, and all math involved, are on the [0:1] scale.
g - Variable in class edu.rutgers.md.format.Reflect.Entry
getApprehensionRate(String[]) - Static method in class edu.rutgers.md.engine.Prediction
getAttemptRate(String[], int) - Static method in class edu.rutgers.md.engine.Prediction
getBoolean(String, boolean) - Method in class edu.rutgers.md.engine.ParseConfig
getBoolean(HttpServletRequest, String, boolean) - Static method in class edu.rutgers.md.web.Tools: Extracts the boolean value from the query string name/value pair "name=true" or "name=false".
getCode() - Method in class edu.rutgers.md.sql.Expert
getCollect1time() - Method in class edu.rutgers.md.sql.Survey
getCollect2time() - Method in class edu.rutgers.md.sql.Survey
getDouble(String, double) - Method in class edu.rutgers.md.engine.ParseConfig
getDouble(HttpServletRequest, String, double) - Static method in class edu.rutgers.md.web.Tools
getEA(Enum) - Static method in class edu.rutgers.md.format.Util: Retrieves the EA annotation from an object of an Enum type.
getEA(Enum, String) - Static method in class edu.rutgers.md.format.Util
getEa(Enum) - Static method in class edu.rutgers.md.format.Util
getEM() - Static method in class edu.rutgers.md.sqltools.Main: Creates a new EntityManager from the EntityManagerFactory.
getEM() - Method in class edu.rutgers.md.web.SessionData: Creates a new EntityManager from the EntityManagerFactory.
getEncEsPass() - Method in class edu.rutgers.md.sql.ExtendedSession
getEntry(String) - Method in class edu.rutgers.md.format.Reflect
getEnum(Class<T>, String, T) - Method in class edu.rutgers.md.engine.ParseConfig
getEnum(HttpServletRequest, Class<T>, String, T) - Static method in class edu.rutgers.md.web.Tools
getERole() - Method in class edu.rutgers.md.sql.Role
getEs() - Method in class edu.rutgers.md.sql.User
getEsEnd() - Method in class edu.rutgers.md.sql.ExtendedSession
getExperts() - Method in class edu.rutgers.md.sql.Survey
getFactory() - Static method in class edu.rutgers.md.sqltools.Main: Initializes the EntityManagerFactory using the System properties.
getFinishTime() - Method in class edu.rutgers.md.sql.Survey
getId() - Method in class edu.rutgers.md.sql.Survey
getId() - Method in class edu.rutgers.md.sql.User: This is the internal ID automatically assigned by the database to each entry upon creation.
getInt(String, int) - Method in class edu.rutgers.md.engine.ParseConfig
getK() - Method in class edu.rutgers.md.engine.AllPredictions: How many observation periods are there?
getK() - Method in class edu.rutgers.md.sql.Survey
getLatestRound() - Method in class edu.rutgers.md.sql.Expert: Finds out the most recent round (if ever) in which this expert has submitted a response.
getLong(String, long) - Method in class edu.rutgers.md.engine.ParseConfig
getLong(HttpServletRequest, String, long) - Static method in class edu.rutgers.md.web.Tools: Retrives an integer HTTP request parameter.
getLongId() - Method in class edu.rutgers.md.format.OurTable: A very cludgy way to call getId() regardless of whether it's returning int or long
getMyPid() - Static method in class edu.rutgers.md.sqltools.Main: Finds the process id of the UNIX process for this application.
getName() - Method in class edu.rutgers.md.sql.Expert: A human-readable name or identifier assigned to the user by the survey coordinator
getName() - Method in class edu.rutgers.md.sql.Survey
getNames(Class) - Static method in class edu.rutgers.md.format.Reflect: Returns the array of field names
getOption(String, String) - Method in class edu.rutgers.md.engine.ParseConfig: Gets the requested value from the hash table or from the Java system property aName.
getOption(String, int) - Method in class edu.rutgers.md.engine.ParseConfig: Gets the requested integer value from the hash table or from the Java system property aName.
getOption(String, boolean) - Method in class edu.rutgers.md.engine.ParseConfig: Gets the requested integer value from the hash table or from the Java system property aName.
getOptionDate(String, String) - Method in class edu.rutgers.md.engine.ParseConfig: Gets a date parameter, in the format YYYY-MM-DD
getOptionDouble(String, double) - Method in class edu.rutgers.md.engine.ParseConfig: Gets the requested double value from the hash table or from the Java system property aName.
getOptionEnum(Class<T>, String, T) - Method in class edu.rutgers.md.engine.ParseConfig: Returns the value of the specified parameter if it can be interpreted as a value of the specified enumerated type.
getOptionLong(String, long) - Method in class edu.rutgers.md.engine.ParseConfig
getOwningEntry(Enum) - Method in class edu.rutgers.md.format.Reflect: Finds the entry that describes the field whose type is the the enumerated class for which e is one of the values.
getParameter(String) - Method in class edu.rutgers.md.engine.ParseConfig: Gets the requested value from the hash table.
getPeriodCsv() - Method in class edu.rutgers.md.sql.Survey
getPeriodCsvArray() - Method in class edu.rutgers.md.sql.Survey
getPrintableName(Enum) - Static method in class edu.rutgers.md.format.Util: Human-readable printable name for an enum constant: the actual name, or EA.alt
getReflect(Class) - Static method in class edu.rutgers.md.format.Reflect: Looks up or creates a Reflect instance for a specified class.
getResponse(int) - Method in class edu.rutgers.md.sql.Expert
getResponse1() - Method in class edu.rutgers.md.sql.Expert
getResponse1Time() - Method in class edu.rutgers.md.sql.Expert
getResponse2() - Method in class edu.rutgers.md.sql.Expert
getResponse2Time() - Method in class edu.rutgers.md.sql.Expert
getResponseCsvArray(int) - Method in class edu.rutgers.md.sql.Expert
getResponseTime(int) - Method in class edu.rutgers.md.sql.Expert
getRole() - Method in class edu.rutgers.md.sql.Role
getRoles() - Method in class edu.rutgers.md.sql.User
getServletInfo() - Method in class edu.rutgers.md.web.LoginServlet
getServletInfo() - Method in class edu.rutgers.md.web.LogoutServlet
getSessionData(HttpServletRequest) - Static method in class edu.rutgers.md.web.SessionData: Looks up the SessionData object already associated with the current session, or creates a new one.
getSignupTime() - Method in class edu.rutgers.md.sql.User
getStatus() - Method in class edu.rutgers.md.sql.Survey
getStoredUserName() - Method in class edu.rutgers.md.web.SessionData: Unlike getRemoteUser(), this method does not recheck the extended session cookie.
getString(String, String) - Method in class edu.rutgers.md.engine.ParseConfig
getString(HttpServletRequest, String, String) - Static method in class edu.rutgers.md.web.Tools
getUser_name() - Method in class edu.rutgers.md.sql.User: user_name is used as the primary key and is not editable.
getUser_pass() - Method in class edu.rutgers.md.sql.User: Encrypted password (or, more precisely, the MD5 digest of the password).
getUserEntry() - Method in class edu.rutgers.md.web.ResultsBase: Returns the user object for the currently logged-in user
getVersion() - Static method in class edu.rutgers.md.engine.Main
getVersionDate() - Static method in class edu.rutgers.md.engine.Main

H

hasAnyRole(Role.Name[]) - Method in class edu.rutgers.md.sql.User: Does this user have any of the roles in the specifed list?
hashCode() - Method in class edu.rutgers.md.sql.Role: Based on underlying role name
hasResponse(int) - Method in class edu.rutgers.md.sql.Expert: Retrieves this user's response (if any) from the specified round.
hasRole(Role.Name) - Method in class edu.rutgers.md.sql.User
header4cells() - Static method in class edu.rutgers.md.sql.User: HTML: header for (name, details, roles, enabled)
headerCells() - Static method in class edu.rutgers.md.sql.Survey: Generates an HTML header for the table in which surveys can be listed.
htmlHeaderRow(Class, boolean) - Static method in class edu.rutgers.md.format.Reflect
htmlRow(Object, boolean) - Static method in class edu.rutgers.md.format.Reflect
htmlRow(Object, boolean, boolean) - Static method in class edu.rutgers.md.format.Reflect: Returns a complete TR element, or just a bunch of TD cells.

I

ID - Static variable in class edu.rutgers.md.web.SaveSurvey
id - Variable in class edu.rutgers.md.web.SaveSurvey
ID - Static variable in class edu.rutgers.md.web.SurveyResultsBase: Quuery string parameters
id - Variable in class edu.rutgers.md.web.SurveyResultsBase
ignores(String) - Method in class edu.rutgers.md.format.OurTable: In some classes, certain fields should not be displayed or modified unless certain conditions apply.
IllegalInputException - Exception in edu.rutgers.md.engine: An exception of this type is thrown when we want to report to the user that the data he's entered are invalid
IllegalInputException(String) - Constructor for exception edu.rutgers.md.engine.IllegalInputException
ImportCSV - Class in edu.rutgers.md.engine: Methods responsible for parsing CSV files etc.
ImportCSV() - Constructor for class edu.rutgers.md.engine.ImportCSV
info(String) - Static method in class edu.rutgers.md.engine.Logging
infomsg - Variable in class edu.rutgers.md.web.ResultsBase: The JSP page should always print this message.
inputHidden(String, boolean) - Static method in class edu.rutgers.md.web.Tools: Creates an "input type=hidden" HTML tag
inputHidden(String, long) - Static method in class edu.rutgers.md.web.Tools
inputHidden(String, String) - Static method in class edu.rutgers.md.web.Tools
inputHiddenSurveyInfo() - Method in class edu.rutgers.md.web.DemoResultsBase: If this form has been filled based on a survey data, passed on the info about the survey.
inputHiddenSurveyInfo(int, int) - Static method in class edu.rutgers.md.web.DemoResultsBase
inputText(String) - Static method in class edu.rutgers.md.web.Tools
inputText(String, long) - Static method in class edu.rutgers.md.web.Tools
inputText(String, Object, int) - Static method in class edu.rutgers.md.web.Tools: Creates an 'input type=text' tag.
inputTextArea(String, Object, int, int) - Static method in class edu.rutgers.md.web.Tools
isAdmin() - Method in class edu.rutgers.md.sql.User: Does this user have the "admin" role?
isCoordinator() - Method in class edu.rutgers.md.sql.User: Does this user have the "coordinator" role?
isDigest() - Method in class edu.rutgers.md.format.Reflect.Entry: Does this field store an MD5 digest, rather than the actual value?
isEnabled() - Method in class edu.rutgers.md.sql.User
isIllegal(Enum) - Static method in class edu.rutgers.md.format.Util: Checks if a given enum value carries an @EA(illegal=true) annotation.
isStoreNull(Enum) - Static method in class edu.rutgers.md.format.Util

J

join(String, Object[]) - Static method in class edu.rutgers.md.format.Util: Like join() in Perl

K

k - Variable in class edu.rutgers.md.web.DemoResultsBase
K - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
K - Static variable in class edu.rutgers.md.web.SaveSurvey
k - Variable in class edu.rutgers.md.web.SaveSurvey
K - Static variable in class edu.rutgers.md.web.SurveyResultsBase: Quuery string parameters
k - Variable in class edu.rutgers.md.web.SurveyResultsBase
kBox() - Method in class edu.rutgers.md.web.DemoResultsBase: Creates an HTML snippet with the entry box for the value of K

L

LATEST_ROUND - Static variable in class edu.rutgers.md.sql.Expert: This value of the "ROUND" argument refers to the most recent estimate supplied by this user (in whichever round it may have taken place)
lifeCycle() - Method in class edu.rutgers.md.web.SurveyResultsBase: Generates an HTML table describing the life cycle of surveys, with a specific indication of what stage the current survey is in.
list - Variable in class edu.rutgers.md.web.ListSurveys
listRoles() - Method in class edu.rutgers.md.sql.User
ListSurveys - Class in edu.rutgers.md.web: The back end for the page (listSurvey.jsp) that lists all surveys stored in the database.
ListSurveys(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.ListSurveys
Logging - Class in edu.rutgers.md.engine: Methods used by MD webapp's classes to log warning and error messages.
Logging() - Constructor for class edu.rutgers.md.engine.Logging
LoginServlet - Class in edu.rutgers.md.web: User authentication, for use in the absence of Tomcat's native support (context.xml etc)
LoginServlet() - Constructor for class edu.rutgers.md.web.LoginServlet
LogoutServlet - Class in edu.rutgers.md.web: Terminates the current web session.
LogoutServlet() - Constructor for class edu.rutgers.md.web.LogoutServlet

M

Main - Class in edu.rutgers.md.engine: At the moment, this is an almost empty class; it just stores the application's version number
Main() - Constructor for class edu.rutgers.md.engine.Main
main(String[]) - Static method in class edu.rutgers.md.engine.ParseConfig: Purely for testing.
main(String[]) - Static method in class edu.rutgers.md.sqltools.CreateRoles: For each role name, checks if a Role object with that name already exists in the database, and if not, creates it.
Main - Class in edu.rutgers.md.sqltools: A very simple, stand-alone program that stores a new entity in the database and then performs a query to retrieve it.
Main() - Constructor for class edu.rutgers.md.sqltools.Main
main(String[]) - Static method in class edu.rutgers.md.test.Test1: Runs the application.
makeGetMethodName(String) - Static method in class edu.rutgers.md.format.Reflect
makeSetMethodName(String) - Static method in class edu.rutgers.md.format.Reflect
maxDays - Static variable in class edu.rutgers.md.web.ExtendedSessionManagement: max lifetime of an extended session, in hours
memory() - Static method in class edu.rutgers.md.sqltools.Main: Reports memory use
memory(String) - Static method in class edu.rutgers.md.sqltools.Main: Reports memory use
memoryInfo(String, boolean) - Static method in class edu.rutgers.md.sqltools.Main
message - Variable in class edu.rutgers.md.web.Response
message - Variable in class edu.rutgers.md.web.SaveSurvey
mkExpertTable(boolean) - Method in class edu.rutgers.md.web.SurveyResultsBase: Generates a static table or an HTML form with the expert names
mkPeriodTable(boolean) - Method in class edu.rutgers.md.web.SurveyResultsBase: Generates a static table or an HTML form with the period names

N

N - Static variable in class edu.rutgers.md.web.SurveyResultsBase: Quuery string parameters
n - Variable in class edu.rutgers.md.web.SurveyResultsBase
NAME - Static variable in class edu.rutgers.md.engine.Logging
name - Variable in class edu.rutgers.md.format.Reflect.Entry
NAME - Static variable in class edu.rutgers.md.web.SaveSurvey
Names() - Constructor for class edu.rutgers.md.web.DemoResultsBase.Names
NEW - Static variable in class edu.rutgers.md.web.SurveyResultsBase: Quuery string parameters
nExperts - Variable in class edu.rutgers.md.web.DemoResultsBase
nextStatus() - Method in enum edu.rutgers.md.sql.Survey.Status
njsDiv(double[], double[]) - Static method in class edu.rutgers.md.engine.Prediction: Normalized Jensen-Shannon divergence (JSD(p,q)/log(2)) between two probability distributions.

O

Observables - Class in edu.rutgers.md.engine: An Observables object contains information about the "ground truth" data, i.e.
Observables(String) - Constructor for class edu.rutgers.md.engine.Observables: Creates an Observables object for K time observation periods from a String in CSV format.
OurTable - Class in edu.rutgers.md.format: Entities in edu.rutgers.md.sql (corresponding to table rows) can extend this class, so that their fields can be accessed using certain convenience methods.
OurTable() - Constructor for class edu.rutgers.md.format.OurTable

P

ParseConfig - Class in edu.rutgers.md.engine: This class is used to obtain configuration parameters, from a configuration file or from Java System Properties.
ParseConfig() - Constructor for class edu.rutgers.md.engine.ParseConfig: Creates an empty hashtable.
ParseConfig(String) - Constructor for class edu.rutgers.md.engine.ParseConfig: Creates a hashtable that contains the parsed contents of the specified configuration file.
ParseConfig(Reader) - Constructor for class edu.rutgers.md.engine.ParseConfig: Creates a hashtable that contains the parsed data obtained from an open reader (which may, for example, be associated with an open file), and then closes the reader.
passwordMatches(String, String) - Static method in class edu.rutgers.md.sql.User
payment - Variable in class edu.rutgers.md.format.Reflect.Entry
periodName(String[], int) - Static method in class edu.rutgers.md.engine.AllPredictions: Looks up (if available) or generates a suitable period name.
persistenceUnitName - Static variable in class edu.rutgers.md.sqltools.CreateRoles: This name will be used to configure the EntityManagerFactory based on the corresponding name in the META-INF/persistence.xml file
persistenceUnitName - Static variable in class edu.rutgers.md.sqltools.Main: This name will be used to configure the EntityManagerFactory based on the corresponding name in the META-INF/persistence.xml file
Prediction - Class in edu.rutgers.md.engine: Contains information about one expert's predictions.
Prediction(String, double, double[]) - Constructor for class edu.rutgers.md.engine.Prediction
Prediction(int, String[]) - Constructor for class edu.rutgers.md.engine.Prediction: Constructs a Prediction object from an array of strings (which could be obtained e.g by splitting a line of text from a CSV input file).
Prediction(int, String, String[]) - Constructor for class edu.rutgers.md.engine.Prediction: Constructs a Prediction object using an array of strings (which could be obtained e.g by splitting a line of text from a CSV input file).
predictions - Variable in class edu.rutgers.md.engine.AllPredictions: The experts' predictions
preview - Variable in class edu.rutgers.md.web.Response: The preview mode is turned on when the coordinator is logged in.
processFile(int, LineNumberReader) - Static method in class edu.rutgers.md.engine.ImportCSV: Parses a data file in CSV format, interpreting each non-blank (and non-comment) line of the file as the description of one expert's Prediction.

Q

q - Variable in class edu.rutgers.md.web.DemoSessionData

R

R - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
radio(String, String, Object, boolean) - Static method in class edu.rutgers.md.web.Tools
radioOrBox(String, String, Object, Object, boolean) - Static method in class edu.rutgers.md.web.Tools: Creates an HTML "input" element of the "radio" or "checkbox" type.
radioOrBox(String, String, Object, Object, boolean, String) - Static method in class edu.rutgers.md.web.Tools: Creates an HTML "input" element of the "radio" or "checkbox" type.
randomPermutation(int) - Static method in class edu.rutgers.md.format.Util
randomSample(int, int) - Static method in class edu.rutgers.md.format.Util: Returns an array of nc distinct numbers randomly selected from the range [0..n), and randomly ordered.
Reflect - Class in edu.rutgers.md.format: A bunch of methods to figure what fields a class has, and how to print them out in a more or less sensible way.
Reflect.Entry - Class in edu.rutgers.md.format: An entry describes one field of the class, complete with its access methods and the display hints
reflectToString() - Method in class edu.rutgers.md.format.OurTable: Prints out all fields of the object that, according to the appropriate annotations, we want printed
reflectToString(Object) - Static method in class edu.rutgers.md.format.Reflect: Prints all appropriate fields of the specified object in the default (toString) format
reflectToString(Object, boolean) - Static method in class edu.rutgers.md.format.Reflect
removeRole(Role) - Method in class edu.rutgers.md.sql.User
Response - Class in edu.rutgers.md.web: The back end for the response form (survey/response.jsp) for an expert to enter his predictions.
Response(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.Response
responseAnalysisLinks() - Method in class edu.rutgers.md.web.SurveyResultsBase: Produces HTML with a report on how many experts have entered their estimates in each round, and links for the analysis of the response.
responseCnt - Variable in class edu.rutgers.md.web.SurveyResultsBase: How many users have submitted a response in each round
responseCntLatest - Variable in class edu.rutgers.md.web.SurveyResultsBase: How many users have submitted a response in any round
responseForCsvFile(int) - Method in class edu.rutgers.md.sql.Survey: Puts all responses for one round into an array of Strings that can be later dumped as a CSV file.
responsesTextArea - Variable in class edu.rutgers.md.web.DemoResultsBase
responseTable() - Method in class edu.rutgers.md.web.Response
responseTable(boolean) - Method in class edu.rutgers.md.web.Response: Generates an HTML table which either has entry boxes for the expert to enter his responses to, or just shows the already-entered response.
responseURL() - Method in class edu.rutgers.md.web.SurveyResultsBase: Generates the base of the URLs which need to be supplied to the experts for them to enter their estimates.
responseURLBase() - Method in class edu.rutgers.md.web.SurveyResultsBase
results - Variable in class edu.rutgers.md.web.DemoMain
ResultsBase - Class in edu.rutgers.md.web: The parent class for all classes that serve as back end for various JSP pages.
ResultsBase(HttpServletRequest) - Constructor for class edu.rutgers.md.web.ResultsBase
ResultsBase(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.ResultsBase
Role - Class in edu.rutgers.md.sql: A role is simply a database-storable wrapper around the role name.
Role() - Constructor for class edu.rutgers.md.sql.Role
Role.Name - Enum in edu.rutgers.md.sql
ROUND - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
round - Variable in class edu.rutgers.md.web.DemoResultsBase
ROUND - Static variable in class edu.rutgers.md.web.Response
rp - Variable in class edu.rutgers.md.format.Reflect.Entry
runByCoordinator() - Method in class edu.rutgers.md.web.ResultsBase: Is this command run by a researcher-level user?
RUTag - Class in edu.rutgers.md.web
RUTag() - Constructor for class edu.rutgers.md.web.RUTag

S

s - Variable in class edu.rutgers.md.format.Reflect.Entry
s - Variable in class edu.rutgers.md.web.Response
s - Variable in class edu.rutgers.md.web.SaveSurvey
s - Variable in class edu.rutgers.md.web.SurveyResultsBase
save - Variable in class edu.rutgers.md.web.Response: The preview mode is turned on when the coordinator is logged in.
SAVE - Static variable in class edu.rutgers.md.web.Response
saveAsInsert(Object) - Static method in class edu.rutgers.md.format.Reflect: Saves the object as a MySQL "INSERT" statement
SaveCsvServlet - Class in edu.rutgers.md.web: This servlet saves all responses stored for a given survey in the database into a CSV file.
SaveCsvServlet() - Constructor for class edu.rutgers.md.web.SaveCsvServlet
SaveSurvey - Class in edu.rutgers.md.web: The back end for coord/saveSurvey.jsp.
SaveSurvey(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.SaveSurvey
sd - Variable in class edu.rutgers.md.web.DemoResultsBase: All the data that are meant to be persistent between requests in the same session
sd - Variable in class edu.rutgers.md.web.ResultsBase: All the data that are meant to be persistent between requests in the same session
sensorFileName - Variable in class edu.rutgers.md.web.DemoSessionData
sensorFromTextarea - Variable in class edu.rutgers.md.web.DemoSessionData
service(HttpServletRequest, HttpServletResponse) - Method in class edu.rutgers.md.web.LoginServlet
service(HttpServletRequest, HttpServletResponse) - Method in class edu.rutgers.md.web.LogoutServlet
service(HttpServletRequest, HttpServletResponse) - Method in class edu.rutgers.md.web.SaveCsvServlet
SessionData - Class in edu.rutgers.md.web: A single instance of this class is associated with a particular session of the web application.
setCode(String) - Method in class edu.rutgers.md.sql.Expert
setEncEsPass(String) - Method in class edu.rutgers.md.sql.ExtendedSession
setEs(Set<ExtendedSession>) - Method in class edu.rutgers.md.sql.User
setEsEnd(Date) - Method in class edu.rutgers.md.sql.ExtendedSession
setExperts(List<Expert>) - Method in class edu.rutgers.md.sql.Survey
setId(int) - Method in class edu.rutgers.md.sql.Survey
setK(int) - Method in class edu.rutgers.md.sql.Survey
setLevel(Level) - Static method in class edu.rutgers.md.engine.Logging
setName(String) - Method in class edu.rutgers.md.sql.Expert
setName(String) - Method in class edu.rutgers.md.sql.Survey
setObservables(Observables) - Method in class edu.rutgers.md.engine.AllPredictions: Sets the observable values (aka "ground truth") in an object that already contains the experts' predictions.
setPeriodCsv(String) - Method in class edu.rutgers.md.sql.Survey
setPeriodNames(String[]) - Method in class edu.rutgers.md.engine.AllPredictions: Sets the period names for the observation periods.
setResponse(int, String[]) - Method in class edu.rutgers.md.sql.Expert
setResponse1(String) - Method in class edu.rutgers.md.sql.Expert
setResponse2(String) - Method in class edu.rutgers.md.sql.Expert
setRole(String) - Method in class edu.rutgers.md.sql.Role
setRole(Role.Name) - Method in class edu.rutgers.md.sql.Role
setStatus(Survey.Status) - Method in class edu.rutgers.md.sql.Survey
setUser_name(String) - Method in class edu.rutgers.md.sql.User
setUser_pass(String) - Method in class edu.rutgers.md.sql.User
setWeighting(boolean, double) - Method in class edu.rutgers.md.engine.AllPredictions: Sets the parameters associated with the mapping of the experts' NJSD values to their weights.
sid - Variable in class edu.rutgers.md.web.DemoResultsBase
splitCSV(String) - Static method in class edu.rutgers.md.engine.ImportCSV: Converts a single string (such as a line of CSV file) into an array of strings.
sqlDf - Static variable in class edu.rutgers.md.format.Reflect
stage - Variable in class edu.rutgers.md.web.DemoSessionData
STATUS - Static variable in class edu.rutgers.md.web.SaveSurvey
storeUserName(String) - Method in class edu.rutgers.md.web.SessionData: Saves the user name (received from the [validated] login form, or recovered via a persistent cookie) into the session's memory.
SUBMIT - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
submit(String) - Static method in class edu.rutgers.md.web.Tools
SUBMIT_BOX - Static variable in class edu.rutgers.md.web.DemoResultsBase.Buttons
SUBMIT_FILE - Static variable in class edu.rutgers.md.web.DemoResultsBase.Buttons
submitButton() - Method in class edu.rutgers.md.web.Response
Survey - Class in edu.rutgers.md.sql: A Survey object contains all information pertaining to a single survey.
Survey() - Constructor for class edu.rutgers.md.sql.Survey: Dummy constructor, just because OpenJPA requires it
Survey.Status - Enum in edu.rutgers.md.sql: Stages in a survey's life cycle
SURVEY_ID - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
surveyLink() - Method in class edu.rutgers.md.web.DemoResultsBase
SurveyResultsBase - Class in edu.rutgers.md.web: The common parent of several back end structures for various pages dealing with survey management.
SurveyResultsBase(HttpServletRequest, HttpServletResponse) - Constructor for class edu.rutgers.md.web.SurveyResultsBase

T

Test1 - Class in edu.rutgers.md.test: This is a simple command-line application that demonstrates some ways of using the edu.rutgers.md.engine API.
Test1() - Constructor for class edu.rutgers.md.test.Test1
timeAndAgo(Date) - Static method in class edu.rutgers.md.format.Util
to4cells() - Method in class edu.rutgers.md.sql.User: HTML: name, details, roles, enabled ; personal name, email
toCells() - Method in class edu.rutgers.md.sql.Survey: Generates a sequence of HTML TD elements containing the basic information about the survey.
toCSV(String[]) - Static method in class edu.rutgers.md.sql.Survey: Converts an array of values into a single string in CSV format.
today() - Static method in class edu.rutgers.md.format.Util
Tools - Class in edu.rutgers.md.web: Various methods related to generating HTML forms and their components, and processing requests sent by the web browser when those forms are filled
Tools() - Constructor for class edu.rutgers.md.web.Tools
toString() - Method in class edu.rutgers.md.engine.AllPredictions: Prints a more or less pretty human-readable report
toString() - Method in class edu.rutgers.md.engine.AvgPrediction
toString(boolean, boolean) - Method in class edu.rutgers.md.engine.AvgPrediction
toString() - Method in class edu.rutgers.md.engine.Observables
toString() - Method in class edu.rutgers.md.engine.Prediction
toString(boolean, boolean) - Method in class edu.rutgers.md.engine.Prediction
toString() - Method in class edu.rutgers.md.sql.Expert
toString() - Method in class edu.rutgers.md.sql.Role
toString() - Method in class edu.rutgers.md.sql.User: Link to the matching EE4User object, when applicable.
toString() - Method in class edu.rutgers.md.web.SessionData
toString1() - Method in class edu.rutgers.md.engine.AllPredictions: Converts all experts' data into a string that consists of multiple lines of text, each one representing one expert's predictions in the CSV format.
toString1() - Method in class edu.rutgers.md.engine.Prediction: Prints out the content as a String in CSV format.
TRUE_CAPTURE - Static variable in class edu.rutgers.md.web.DemoResultsBase.Names
trueCaptureBox() - Method in class edu.rutgers.md.web.DemoResultsBase: Creates an HTML snippet with the entry box for the "ground truth" data

U

User - Class in edu.rutgers.md.sql: A User entry contains basic information about one user of the system.
User() - Constructor for class edu.rutgers.md.sql.User
user - Variable in class edu.rutgers.md.web.ResultsBase: User name logged in this session
userAgent - Variable in class edu.rutgers.md.web.ResultsBase
useResponses - Variable in class edu.rutgers.md.web.DemoResultsBase: It's true if the JSP page is using the data coming from the SQL database (a Survey object), as opposed to data hand-entered via the demo form.
Util - Class in edu.rutgers.md.format: A bunch of auxiliary methods, mostly used to help with formatting printable data.
Util() - Constructor for class edu.rutgers.md.format.Util

V

validate(EntityManager, StringBuffer) - Method in class edu.rutgers.md.format.OurTable: Validates a recently created entry, before it has been put into the database.
validate(EntityManager, StringBuffer) - Method in class edu.rutgers.md.sql.User
validRoundExt(int) - Static method in class edu.rutgers.md.sql.Expert: Can the argument be interpreted as a valid round number? (Either an actual round, or LATEST_ROUND)
valueOf(String) - Static method in enum edu.rutgers.md.sql.Role.Name: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.rutgers.md.sql.Survey.Status: Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.rutgers.md.sql.Role.Name: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.rutgers.md.sql.Survey.Status: Returns an array containing the constants of this enum type, in the order they are declared.
version - Static variable in class edu.rutgers.md.engine.Main: Version number

W

warning(String) - Static method in class edu.rutgers.md.engine.Logging
WebException - Exception in edu.rutgers.md.web
WebException(String) - Constructor for exception edu.rutgers.md.web.WebException
weightedAvg(Vector<Prediction>) - Static method in class edu.rutgers.md.engine.Prediction: Computes the weighted average of all predictions.
whichRound() - Method in class edu.rutgers.md.web.DemoResultsBase

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